Intro/Verse
Play harmonics on the "2.6" and 4th frets, picking extremely fast.
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D--2.6-2.6-2.6-4-4-4-4----------------------------------------------
   ~~~~~Harmonics~~~~~ Use heavy flange and put the wah in the toe
down position to minimize the tone.  It doesn't really matter which
harmonic you use, as both sound fine.

Chorus

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---6-----------------------6--------------------12/-----------------
---5-----------------------5--------------------12/-----------------
---x-----------------------x----------------------------------------
---5--------3---5-3--------5---------10---5-3-----------------------
D-----3-5-0---0-----0-5-3----3-5-0-7-10-0-----0---------------------

Bridge 1                       Bridge 2 (After solo)
(Repeat several times)       
e--10--x-x----------------------------------------------------------
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----7--x-x-------------------------10---5---------------------------
-----------------------------------10---5---------------------------
------------------------------------8---3---0-----------------------
D-------------------------------------------0-----------------------

Solo: I'm not exactly what effects Tom uses for the solo, but here is
what I do.  I remove the cable from my guitar and put it on the strings
and use a wah pedal to get the rythm.  If you want to make it more
interesting, you can use a whammy pedal, but it is not necessary.